| Baseball America Organization of the Year |
| Year |
Team |
| 1982 |
Oakland Athletics |
| 1983 |
New York Mets |
| 1984 |
New York Mets |
| 1985 |
Milwaukee Brewers |
| 1986 |
Milwaukee Brewers |
| 1987 |
Milwaukee Brewers |
| 1988 |
Montreal Expos |
| 1989 |
Texas Rangers |
| 1990 |
Montreal Expos |
| 1991 |
Atlanta Braves |
| 1992 |
Cleveland Indians |
| 1993 |
Toronto Blue Jays |
| 1994 |
Kansas City Royals |
| 1995 |
New York Mets |
| 1996 |
Atlanta Braves |
| 1997 |
Detroit Tigers |
| 1998 |
New York Yankees |
| 1999 |
Oakland Athletics |
| 2000 |
Chicago White Sox |
| 2001 |
Houston Astros |
| 2002 |
Minnesota Twins |
| 2003 |
Florida Marlins |
